WebcreateGiottoObject; createGiottoVisiumObject; filterGiotto; subsetGiotto; subsetGiottoLocs; Giotto Environment; Giotto Helper Functions; Giotto Processing Functions; Import Raw … WebNov 24, 2024 · [ Requirements] To create a giotto object you need to provide at least a matrix with genes as row names and cells as column names. This matrix can be …
Giotto/python_environment.R at master · drieslab/Giotto · GitHub
WebOct 6, 2024 · To create a giotto object you need to provide at least a matrix with genes as row names and cells as column names. This matrix can be provided as a base matrix, … Web[ Requirements ] To create a giotto object you need to provide at least a matrix with genes as row names and cells as column names. This matrix can be provided as a base matrix, sparse Matrix, data.frame, disaster risk services programs and project
Giotto Object to STdeconvolve #35 - Github
WebFunctions that will (help to) add, update or change the Giotto object when processing spatial data. Function. Description. filterDistributions () Show Gene Distributions. filterCombinations () Show Gene/Cell Loss. normalizeGiotto () Normalize And/Or Scale Expression Values. WebcreateGiottoObject() createGiottoObject. createGiottoVisiumObject() createGiottoVisiumObject. createGiottoObjectSubcellular() createGiottoObjectSubcellular. Giotto helper functions . Common functions to help working with Giotto objects. pDataDT() pDataDT. fDataDT() fDataDT. filterDistributions() filterDistributions. filterCombinations ... Webfor the Giotto object. [Multiple fields] In case a dataset consists of multiple fields, like seqFISH+ for example, stitchFieldCoordinatescan be used to generate such an offset file. [Processed data] Processed count data, such as normalized data, can be provided using one of the different expression slots (norm_expr, norm_scaled_expr, custom_expr). disboard emoji server